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## Warning in get_regions_with_probes(regions_to_analyze, positions): The following regions selected have no probes to be analyzed thus were removed from the analysis:
## IGF2:alt-TSS-DMR
## Warning in dir.create(dir_name): '/Users/alexishardy/Desktop/GitHub_Files/
## GitHub/EVIAN/ExampleOfReport/ZH2005406ms1__ZH1712576ms2_MethPctAnalysis' existe
## déjà
## Warning in dir.create(paste0(dir_name, "/", "MethPctPlot_wholeGenome")):
## '/Users/alexishardy/Desktop/GitHub_Files/GitHub/EVIAN/ExampleOfReport/
## ZH2005406ms1__ZH1712576ms2_MethPctAnalysis/MethPctPlot_wholeGenome' existe déjà
## Warning in dir.create(paste0(dir_name, "/", "MethPctPlot_perRegion")): '/
## Users/alexishardy/Desktop/GitHub_Files/GitHub/EVIAN/ExampleOfReport/
## ZH2005406ms1__ZH1712576ms2_MethPctAnalysis/MethPctPlot_perRegion' existe déjà

General information

Date of report 2022-04-25 23:21:47
Software version 0.8
Nb of tested samples 2
Names of tested samples ZH2005406ms1 ZH1712576ms2
Control population filename Control_population.csv.gz
Nb of tested cpg probes 239
Nb of tested regions 9
Mean size of tested regions 2363.889
Min|Max size of tested regions 517-5047
Mean probe count per tested region 26.55556
Min|Max probe count per tested region 3-61
Nb of tested control cpg probes 76
Nb of control regions 3
Mean size of control regions 3328
Min|Max size of control regions 961-5047
Mean probe count per control region 25.33333
Min|Max probe count per control region 9-43
Date of report 2022-04-25 23:21:47



Methylation Percentage difference distribution per sample

ZH2005406ms1

ZH1712576ms2



Methylation Percentage per region per sample



Methylation Percentage difference per region

Mean methylation Percentage (%)
Difference against ctrlPop
group region_name position_hg38 ctrlPop ZH2005406ms1 ZH1712576ms2
MLID PHP DIRAS3:TSS-DMR chr1:68050105-68051590 50.901 -7.290 -13.823
PHP GNAS A/B:TSS-DMR chr20:58888210-58890120 53.231 -3.747 -42.647
BWS PHP GNAS-AS1:TSS-DMR chr20:58850924-58852977 46.255 -3.111 -36.767
BWS PHP SRS GNAS-NESP:TSS-DMR chr20:58838984-58842960 51.702 -7.765 29.123
PHP GNAS-XL:Ex1-DMR chr20:58854222-58856248 55.667 -5.517 -38.934
BWS SRS H19/IGF2:IG-DMR chr11:1997849-2002896 55.635 -5.257 -10.614
BWS SRS IGF2:Ex9-DMR chr11:2132761-2133722 47.114 8.653 0.775
KOS14 MLID PHP TS14 MEG3:TSS-DMR chr14:100824219-100827519 53.789 -5.668 -10.657
BWS MLID WRB:alt-TSS-DMR chr21:39385765-39386282 47.258 -11.292 -11.858



Methylation Percentage profiles

DIRAS3:TSS-DMR

GNAS A/B:TSS-DMR

GNAS-AS1:TSS-DMR

GNAS-NESP:TSS-DMR

GNAS-XL:Ex1-DMR

H19/IGF2:IG-DMR

IGF2:Ex9-DMR

MEG3:TSS-DMR

WRB:alt-TSS-DMR