DNA methylation Percentage distribution report
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## Warning in get_regions_with_probes(regions_to_analyze, positions): The following regions selected have no probes to be analyzed thus were removed from the analysis:
## IGF2:alt-TSS-DMR## Warning in dir.create(dir_name): '/Users/alexishardy/Desktop/GitHub_Files/
## GitHub/EVIAN/ExampleOfReport/ZH2005406ms1__ZH1712576ms2_MethPctAnalysis' existe
## déjà ## Warning in dir.create(paste0(dir_name, "/", "MethPctPlot_wholeGenome")):
## '/Users/alexishardy/Desktop/GitHub_Files/GitHub/EVIAN/ExampleOfReport/
## ZH2005406ms1__ZH1712576ms2_MethPctAnalysis/MethPctPlot_wholeGenome' existe déjà ## Warning in dir.create(paste0(dir_name, "/", "MethPctPlot_perRegion")): '/
## Users/alexishardy/Desktop/GitHub_Files/GitHub/EVIAN/ExampleOfReport/
## ZH2005406ms1__ZH1712576ms2_MethPctAnalysis/MethPctPlot_perRegion' existe déjà General information
| Date of report | 2022-04-25 23:21:47 |
| Software version | 0.8 |
| Nb of tested samples | 2 |
| Names of tested samples | ZH2005406ms1 ZH1712576ms2 |
| Control population filename | Control_population.csv.gz |
| Nb of tested cpg probes | 239 |
| Nb of tested regions | 9 |
| Mean size of tested regions | 2363.889 |
| Min|Max size of tested regions | 517-5047 |
| Mean probe count per tested region | 26.55556 |
| Min|Max probe count per tested region | 3-61 |
| Nb of tested control cpg probes | 76 |
| Nb of control regions | 3 |
| Mean size of control regions | 3328 |
| Min|Max size of control regions | 961-5047 |
| Mean probe count per control region | 25.33333 |
| Min|Max probe count per control region | 9-43 |
| Date of report | 2022-04-25 23:21:47 |
Methylation Percentage difference distribution per sample
ZH2005406ms1
ZH1712576ms2
Methylation Percentage per region per sample
Methylation Percentage difference per region
| group | region_name | position_hg38 | ctrlPop | ZH2005406ms1 | ZH1712576ms2 |
|---|---|---|---|---|---|
| MLID PHP | DIRAS3:TSS-DMR | chr1:68050105-68051590 | 50.901 | -7.290 | -13.823 |
| PHP | GNAS A/B:TSS-DMR | chr20:58888210-58890120 | 53.231 | -3.747 | -42.647 |
| BWS PHP | GNAS-AS1:TSS-DMR | chr20:58850924-58852977 | 46.255 | -3.111 | -36.767 |
| BWS PHP SRS | GNAS-NESP:TSS-DMR | chr20:58838984-58842960 | 51.702 | -7.765 | 29.123 |
| PHP | GNAS-XL:Ex1-DMR | chr20:58854222-58856248 | 55.667 | -5.517 | -38.934 |
| BWS SRS | H19/IGF2:IG-DMR | chr11:1997849-2002896 | 55.635 | -5.257 | -10.614 |
| BWS SRS | IGF2:Ex9-DMR | chr11:2132761-2133722 | 47.114 | 8.653 | 0.775 |
| KOS14 MLID PHP TS14 | MEG3:TSS-DMR | chr14:100824219-100827519 | 53.789 | -5.668 | -10.657 |
| BWS MLID | WRB:alt-TSS-DMR | chr21:39385765-39386282 | 47.258 | -11.292 | -11.858 |
Methylation Percentage profiles
DIRAS3:TSS-DMR
GNAS A/B:TSS-DMR
GNAS-AS1:TSS-DMR
GNAS-NESP:TSS-DMR
GNAS-XL:Ex1-DMR
H19/IGF2:IG-DMR
IGF2:Ex9-DMR
MEG3:TSS-DMR
WRB:alt-TSS-DMR
